Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0758981 with 18 members (PWWP domain containing 2B)

Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda /

... /

Amniota / Sauria / Archelosauria /

Archosauria /

Completeness score: 0.89

‹

This HOG has 30 similar HOGs:

Loading, please wait...

Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0758981	2200	158	PWWP domain containing 2B
2	HOG:E0758981.3b	36	2	PWWP domain containing 2B
3	HOG:E0758981.3a	36	2	PWWP domain containing 2B
4	HOG:E0758981.2b	36	2	PWWP domain containing 2B
5	HOG:E0537443	26	14	Derived by automated computational analysis using gene prediction method Gnomon
6	HOG:E0758981.2a	18	1	PWWP domain containing 2B
7	HOG:E0758981.4b	17	1	PWWP domain containing 2B
8	HOG:E0758981.4a	17	1	PWWP domain containing 2B
9	HOG:E0642818	17	40	PWWP domain-containing protein
10	HOG:E0758981.1b	10	1	PWWP domain containing 2B
11	HOG:E0758981.1a	10	1	PWWP domain containing 2B
12	HOG:E0990642.130avf	2	3	abc transporter
13	HOG:E0746740.1a.1a	2	91	PWWP domain containing 2A
14	HOG:E0540715	2	4	-
15	HOG:E0532424	2	4	Derived by automated computational analysis using gene prediction method Gnomon
16	HOG:E1008690	1	23	Conserved repeat domain protein
17	HOG:E0807715.2a.5b.6a.1b	1	68	PSP proline-rich domain-containing protein
18	HOG:E0801468.10ksf	1	10	domain-containing protein
19	HOG:E0634952	1	43	Derived by automated computational analysis using gene prediction method Gnomon
20	HOG:E0630798.1a	1	4	serine/arginine repetitive matrix protein
21	HOG:E0624938	1	6	Dystrophin
22	HOG:E0617912	1	13	Uncharacterized protein
23	HOG:E0532149.1a	1	6	Derived by automated computational analysis using gene prediction method Gnomon
24	HOG:E0482327.1c	1	1	-
25	HOG:E0466272.1d	1	27	uncharacterized protein

Showing 1 to 25 of 30 rows rows per page